Module table.merge in plugin tabular v0.5.3

Create a table from other tables and/or arrays.

This module needs configuration to be set (for now). It's currently not possible to merge an arbitrary number of tables/arrays, all tables to be merged must be specified in the module configuration.

Column names of the resulting table can be controlled by the 'column_map' configuration, which takes the desired column name as key, and a field-name in the following format as value:

• '[inputs_schema key]' for inputs of type 'array'
• '[inputs_schema_key].orig_column_name' for inputs of type 'table'

Author(s)	Markus Binsteiner (markus@frkl.io)
Tags	tabular
Python class	kiara_plugin.tabular.modules.table.MergeTableModule

Configuration

Module configuration options

Configuration class: kiara_plugin.tabular.modules.table.MergeTableConfig

Name	Description	Type	Required?	Default
inputs_schema	A dict describing the inputs for this merge process.	object	true	null
column_map	A map describing	object	false	null
constants	Value constants for this module.	object	false	null
defaults	Value defaults for this module.	object	false	null

Source code

Module source code

class MergeTableModule(KiaraModule):
    """Create a table from other tables and/or arrays.

    This module needs configuration to be set (for now). It's currently not possible to merge an arbitrary
    number of tables/arrays, all tables to be merged must be specified in the module configuration.

    Column names of the resulting table can be controlled by the 'column_map' configuration, which takes the
    desired column name as key, and a field-name in the following format as value:
    - '[inputs_schema key]' for inputs of type 'array'
    - '[inputs_schema_key].orig_column_name' for inputs of type 'table'
    """

    _module_type_name = "table.merge"
    _config_cls = MergeTableConfig

    def create_inputs_schema(
        self,
    ) -> ValueMapSchema:

        input_schema_models = self.get_config_value("inputs_schema")

        input_schema_dict = {}
        for k, v in input_schema_models.items():
            input_schema_dict[k] = v.model_dump()

        return input_schema_dict

    def create_outputs_schema(
        self,
    ) -> ValueMapSchema:

        outputs = {
            "table": {
                "type": "table",
                "doc": "The merged table, including all source tables and columns.",
            }
        }
        return outputs

    def process(self, inputs: ValueMap, outputs: ValueMap, job_log: JobLog) -> None:

        import pyarrow as pa

        inputs_schema: Dict[str, Any] = self.get_config_value("inputs_schema")
        column_map: Dict[str, str] = self.get_config_value("column_map")

        sources = {}
        for field_name in inputs_schema.keys():
            sources[field_name] = inputs.get_value_data(field_name)

        len_dict = {}
        arrays = {}

        column_map_final = dict(column_map)

        for source_key, table_or_array in sources.items():

            if isinstance(table_or_array, KiaraTable):
                rows = table_or_array.num_rows
                for name in table_or_array.column_names:
                    array_name = f"{source_key}.{name}"
                    if column_map and array_name not in column_map.values():
                        job_log.add_log(
                            f"Ignoring column '{name}' of input table '{source_key}': not listed in column_map."
                        )
                        continue

                    column = table_or_array.arrow_table.column(name)
                    arrays[array_name] = column
                    if not column_map:
                        if name in column_map_final:
                            raise Exception(
                                f"Can't merge table, duplicate column name: {name}."
                            )
                        column_map_final[name] = array_name

            elif isinstance(table_or_array, KiaraArray):

                if column_map and source_key not in column_map.values():
                    job_log.add_log(
                        f"Ignoring array '{source_key}': not listed in column_map."
                    )
                    continue

                rows = len(table_or_array)
                arrays[source_key] = table_or_array.arrow_array

                if not column_map:
                    if source_key in column_map_final.keys():
                        raise Exception(
                            f"Can't merge table, duplicate column name: {source_key}."
                        )
                    column_map_final[source_key] = source_key

            else:
                raise KiaraProcessingException(
                    f"Can't merge table: invalid type '{type(table_or_array)}' for source '{source_key}'."
                )

            len_dict[source_key] = rows

        all_rows = None
        for source_key, rows in len_dict.items():
            if all_rows is None:
                all_rows = rows
            elif all_rows != rows:
                all_rows = None
                break

        if all_rows is None:
            len_str = ""
            for name, rows in len_dict.items():
                len_str = f" {name} ({rows})"

            raise KiaraProcessingException(
                f"Can't merge table, sources have different lengths: {len_str}"
            )

        column_names = []
        columns = []
        for column_name, ref in column_map_final.items():
            column_names.append(column_name)
            column = arrays[ref]
            columns.append(column)

        table = pa.Table.from_arrays(arrays=columns, names=column_names)

        outputs.set_value("table", table)